Hello!
I am trying to reconstruct metabolic pathways using METABOLIC pipeline, it has gtdb-tk.
I ended up with this issue:
"
ERROR: Reference genome missing from FastANI database: /mnt/nvme/tutukina/GTDB/release226/fastani/database/GCA/003/136/555/GCA_003136555.1_genomic.fna.gz
ERROR: Controlled exit resulting from an unrecoverable error or warning.
Earlier, I donwloaded the new version 226 release and assinged taxonomy with gtdb-tk
It woked ok, I got a few species and the most of mags are genus or family levels.
"
I used;
“wget https://data.gtdb.ecogenomic.org/releases/release226/226.0/auxillary_files/gtdbtk_package/full_package/gtdbtk_r226_data.tar.gz”
I don’t even have the folder as it said in the error, what I have is
/GTDB/release226$ ls
markers masks metadata mrca_red msa pplacer radii skani split taxonomy
How can I get everything right?
I would appreciate any help.
Best,
Alla