R202 to r207 taxonomy conversion table?

Bacterial Taxonomy
1

Dear GTDB team, thank you for all your work!

Apologies if ive just missed this, but i was wondering if you had a conversion table for all species name changes / genome assignment conversions?

I have seen GTDB - Taxon History, however this requires searching for a particular taxon one at a time, while i was hoping for a mapping file to crudely convert r202 to r207 names, if that makes sense.

Thanks in advance for your time,

ag35

2

Hi,

You can use the Taxon History tool to explore how assignments have changed between releases:
https://gtdb.ecogenomic.org/taxon-history

If you need a full change log between releases, I believe the gtdb-taxdump tool by Wei Shen can provide this information:

Cheers,
Donovan

1 Like
3

Many thanks, it sounds like the tool by Wei Shen is exactly what i need! I will have a go :slight_smile: