first let me say thank you fro developing this excellent tool.We are just starting to use this in our lab and trying to figure out, what all is possible
Currently I am thinking about using GTDB tk to generate a tree for a genus of interest from a set of reference genomes and our own isolates.
The genus has a gene, that is very specific for it’s members, so I am am wondering if there is any way in GTDB tk to include an additional marker gene in the analysis. Is it somehow possible to add a protein to the marker set?
Thank you and best Wishes