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About the GTDB-Tk category
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0
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872
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August 4, 2020
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Existance of (or how to create) a 'tiny' version of GTDB for use for GTDB-Tk testing
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0
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11
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August 22, 2024
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Multiple gtdbtk classify_wf output treefile
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8
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1407
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August 21, 2024
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Using classify_wf with low completeness genomes
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0
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10
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August 12, 2024
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Decorating Tree from User Archaea MSA
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0
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13
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August 8, 2024
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Creating "new taxa" from the de_novo_wf tree
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2
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24
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July 31, 2024
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Error in GTDB-Tk v2.4.0, gtdbtk classify_wf ; ERROR: Error generating Mash sketch:
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4
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71
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July 31, 2024
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Keep just my genomes
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1
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26
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July 29, 2024
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About "Cannot allocate memory" in gtdbtk classify_wf
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1
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43
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July 1, 2024
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GTDB-tk has given confliction results for two genomes using different command
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1
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148
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May 7, 2024
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ID association in tree output
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24
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4103
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May 6, 2024
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Classification only worked for archaea, bacterial output not created
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0
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109
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April 23, 2024
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How to estimate resource requirements for classifying 60k genomes?
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3
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207
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March 28, 2024
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GTDB-Tk backbone tree
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1
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384
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February 19, 2024
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Eukaryotes classified as new phyla or divergent prokaryotes
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4
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541
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October 27, 2023
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When should I use classify_wf instead of da_novo_wf?
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1
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656
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October 26, 2023
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How to use my own genome data of only type strains to reconstruct phylogenetic tree using GTDB-Tk software?
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2
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527
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October 10, 2023
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Error in gtdbtk-2.3.0, de_novo_wf and test
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2
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641
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July 6, 2023
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--no-check-certificate
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0
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629
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June 24, 2023
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I would like to narrow down phlygenetic tree only based on type materials
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4
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650
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June 13, 2023
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[Errno 1] Operation not permitted
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4
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559
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June 1, 2023
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Why is GTDB-Tk hard coded to use FastTree with 1 CPU?
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2
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689
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April 18, 2023
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Convert Gtdbtk itol tree taxonomy into NCBI itol tree taxonomy
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0
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797
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March 16, 2023
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[de_novo_wf] taxa with multiple placements of equal quality
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1
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960
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March 16, 2023
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How can I use the --mash_db option of classify_wf
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5
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2576
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February 18, 2023
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Error during gtdbtk classify_wf : No such gtdbtk.bac120.summary.tsv
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1
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947
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January 11, 2023
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Visualize GTDB classification
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5
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1362
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December 7, 2022
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Issues with downloading the latest version (2.1.1) and mapping the reference data
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1
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1019
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December 2, 2022
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What would it take to adapt GTDB-Tk for protista and single-celled fungi?
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2
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929
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November 15, 2022
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I made a Snakemake Workflow for GTDB-tk
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0
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663
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October 24, 2022
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