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About the GTDB-Tk category
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|
0
|
900
|
August 4, 2020
|
|
The GTDB-Tk results and mash distance
|
|
5
|
26
|
July 22, 2025
|
|
How long does classify_wf usually take?
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1
|
73
|
July 2, 2025
|
|
The GTDB-Tk reference data does not exist or is corrupted
|
|
2
|
54
|
June 12, 2025
|
|
Existance of (or how to create) a 'tiny' version of GTDB for use for GTDB-Tk testing
|
|
1
|
86
|
May 9, 2025
|
|
Gtdb-tk align taxa_filter question
|
|
1
|
77
|
January 8, 2025
|
|
GTDB-Tk files count
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|
3
|
76
|
December 17, 2024
|
|
How is alignment fraction from skani used in screening?
|
|
2
|
95
|
November 8, 2024
|
|
Multiple gtdbtk classify_wf output treefile
|
|
8
|
1719
|
August 21, 2024
|
|
Using classify_wf with low completeness genomes
|
|
0
|
57
|
August 12, 2024
|
|
Decorating Tree from User Archaea MSA
|
|
0
|
73
|
August 8, 2024
|
|
Creating "new taxa" from the de_novo_wf tree
|
|
2
|
112
|
July 31, 2024
|
|
Error in GTDB-Tk v2.4.0, gtdbtk classify_wf ; ERROR: Error generating Mash sketch:
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|
4
|
263
|
July 31, 2024
|
|
Keep just my genomes
|
|
1
|
111
|
July 29, 2024
|
|
About "Cannot allocate memory" in gtdbtk classify_wf
|
|
1
|
81
|
July 1, 2024
|
|
GTDB-tk has given confliction results for two genomes using different command
|
|
1
|
177
|
May 7, 2024
|
|
ID association in tree output
|
|
24
|
4407
|
May 6, 2024
|
|
Classification only worked for archaea, bacterial output not created
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|
0
|
155
|
April 23, 2024
|
|
How to estimate resource requirements for classifying 60k genomes?
|
|
3
|
238
|
March 28, 2024
|
|
GTDB-Tk backbone tree
|
|
1
|
650
|
February 19, 2024
|
|
Eukaryotes classified as new phyla or divergent prokaryotes
|
|
4
|
596
|
October 27, 2023
|
|
When should I use classify_wf instead of da_novo_wf?
|
|
1
|
854
|
October 26, 2023
|
|
How to use my own genome data of only type strains to reconstruct phylogenetic tree using GTDB-Tk software?
|
|
2
|
560
|
October 10, 2023
|
|
Error in gtdbtk-2.3.0, de_novo_wf and test
|
|
2
|
662
|
July 6, 2023
|
|
--no-check-certificate
|
|
0
|
647
|
June 24, 2023
|
|
I would like to narrow down phlygenetic tree only based on type materials
|
|
4
|
700
|
June 13, 2023
|
|
[Errno 1] Operation not permitted
|
|
4
|
570
|
June 1, 2023
|
|
Why is GTDB-Tk hard coded to use FastTree with 1 CPU?
|
|
2
|
709
|
April 18, 2023
|
|
Convert Gtdbtk itol tree taxonomy into NCBI itol tree taxonomy
|
|
0
|
840
|
March 16, 2023
|
|
[de_novo_wf] taxa with multiple placements of equal quality
|
|
1
|
1034
|
March 16, 2023
|