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About the GTDB-Tk category
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0
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512
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August 4, 2020
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Multiple gtdbtk classify_wf output treefile
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7
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527
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August 16, 2023
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Error in gtdbtk-2.3.0, de_novo_wf and test
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2
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122
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July 6, 2023
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--no-check-certificate
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0
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148
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June 24, 2023
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I would like to narrow down phlygenetic tree only based on type materials
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4
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206
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June 13, 2023
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[Errno 1] Operation not permitted
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4
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165
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June 1, 2023
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Why is GTDB-Tk hard coded to use FastTree with 1 CPU?
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2
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251
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April 18, 2023
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Convert Gtdbtk itol tree taxonomy into NCBI itol tree taxonomy
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0
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255
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March 16, 2023
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[de_novo_wf] taxa with multiple placements of equal quality
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1
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294
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March 16, 2023
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How can I use the --mash_db option of classify_wf
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5
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926
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February 18, 2023
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Error during gtdbtk classify_wf : No such gtdbtk.bac120.summary.tsv
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1
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366
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January 11, 2023
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Visualize GTDB classification
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5
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541
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December 7, 2022
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Issues with downloading the latest version (2.1.1) and mapping the reference data
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1
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464
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December 2, 2022
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What would it take to adapt GTDB-Tk for protista and single-celled fungi?
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2
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444
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November 15, 2022
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I made a Snakemake Workflow for GTDB-tk
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0
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322
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October 24, 2022
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Error during gtdbtk classify_wf
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1
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680
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October 23, 2022
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Migration guide from GTDBTk v1.x to v2.x
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0
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282
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September 29, 2022
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Can "Identify" also output Nucleotide sequences?
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3
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324
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August 10, 2022
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GTDB-TK without full data download?
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1
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424
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July 2, 2022
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`gtdbtk` meaning of numbers in internal node names in the output tree
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3
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438
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April 7, 2022
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Gtdb installation
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1
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909
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March 18, 2022
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ID association in tree output
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21
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2481
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March 14, 2022
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Misleading taxonomy assignments
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1
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463
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December 1, 2021
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Why to recalculate RED values?
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2
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629
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August 9, 2021
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Filtration of results based on CheckM
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2
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670
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July 28, 2021
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How does GTDB-Tk handle protists like single-cell algae and diatoms?
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1
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416
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July 26, 2021
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GTDB-Tk tree related questions
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7
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1500
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June 12, 2021
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How to run interrupted job from checkpoint instead of starting over?
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1
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840
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June 10, 2021
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Is it possible to filter the markers for a specific genus?
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1
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522
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March 2, 2021
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What format are newick trees and how to extract specific node?
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3
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3553
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February 15, 2021
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