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About the GTDB-Tk category
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0
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870
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August 4, 2020
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Error in GTDB-Tk v2.4.0, gtdbtk classify_wf ; ERROR: Error generating Mash sketch:
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3
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49
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July 3, 2024
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About "Cannot allocate memory" in gtdbtk classify_wf
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1
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35
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July 1, 2024
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GTDB-tk has given confliction results for two genomes using different command
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1
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135
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May 7, 2024
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ID association in tree output
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24
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4001
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May 6, 2024
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Classification only worked for archaea, bacterial output not created
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0
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100
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April 23, 2024
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How to estimate resource requirements for classifying 60k genomes?
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3
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204
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March 28, 2024
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GTDB-Tk backbone tree
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1
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348
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February 19, 2024
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Eukaryotes classified as new phyla or divergent prokaryotes
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4
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531
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October 27, 2023
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When should I use classify_wf instead of da_novo_wf?
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1
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613
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October 26, 2023
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How to use my own genome data of only type strains to reconstruct phylogenetic tree using GTDB-Tk software?
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2
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511
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October 10, 2023
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Multiple gtdbtk classify_wf output treefile
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7
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1353
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August 16, 2023
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Error in gtdbtk-2.3.0, de_novo_wf and test
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2
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630
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July 6, 2023
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--no-check-certificate
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0
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629
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June 24, 2023
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I would like to narrow down phlygenetic tree only based on type materials
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4
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643
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June 13, 2023
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[Errno 1] Operation not permitted
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4
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557
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June 1, 2023
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Why is GTDB-Tk hard coded to use FastTree with 1 CPU?
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2
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682
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April 18, 2023
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Convert Gtdbtk itol tree taxonomy into NCBI itol tree taxonomy
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0
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788
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March 16, 2023
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[de_novo_wf] taxa with multiple placements of equal quality
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1
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934
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March 16, 2023
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How can I use the --mash_db option of classify_wf
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5
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2416
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February 18, 2023
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Error during gtdbtk classify_wf : No such gtdbtk.bac120.summary.tsv
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1
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933
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January 11, 2023
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Visualize GTDB classification
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5
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1297
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December 7, 2022
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Issues with downloading the latest version (2.1.1) and mapping the reference data
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1
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1011
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December 2, 2022
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What would it take to adapt GTDB-Tk for protista and single-celled fungi?
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2
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911
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November 15, 2022
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I made a Snakemake Workflow for GTDB-tk
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0
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662
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October 24, 2022
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Error during gtdbtk classify_wf
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1
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1363
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October 23, 2022
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Migration guide from GTDBTk v1.x to v2.x
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0
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605
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September 29, 2022
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Can "Identify" also output Nucleotide sequences?
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3
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734
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August 10, 2022
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GTDB-TK without full data download?
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1
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798
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July 2, 2022
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`gtdbtk` meaning of numbers in internal node names in the output tree
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3
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866
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April 7, 2022
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