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About the GTDB-Tk category
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0
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774
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August 4, 2020
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How to estimate resource requirements for classifying 60k genomes?
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3
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82
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March 28, 2024
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GTDB-Tk backbone tree
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1
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164
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February 19, 2024
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Eukaryotes classified as new phyla or divergent prokaryotes
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4
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376
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October 27, 2023
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When should I use classify_wf instead of da_novo_wf?
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1
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402
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October 26, 2023
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How to use my own genome data of only type strains to reconstruct phylogenetic tree using GTDB-Tk software?
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2
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391
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October 10, 2023
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Multiple gtdbtk classify_wf output treefile
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7
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1104
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August 16, 2023
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Error in gtdbtk-2.3.0, de_novo_wf and test
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2
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475
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July 6, 2023
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--no-check-certificate
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0
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506
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June 24, 2023
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I would like to narrow down phlygenetic tree only based on type materials
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4
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518
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June 13, 2023
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[Errno 1] Operation not permitted
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4
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460
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June 1, 2023
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Why is GTDB-Tk hard coded to use FastTree with 1 CPU?
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2
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568
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April 18, 2023
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Convert Gtdbtk itol tree taxonomy into NCBI itol tree taxonomy
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0
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608
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March 16, 2023
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[de_novo_wf] taxa with multiple placements of equal quality
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1
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722
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March 16, 2023
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How can I use the --mash_db option of classify_wf
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5
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1900
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February 18, 2023
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Error during gtdbtk classify_wf : No such gtdbtk.bac120.summary.tsv
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1
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764
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January 11, 2023
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Visualize GTDB classification
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5
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1080
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December 7, 2022
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Issues with downloading the latest version (2.1.1) and mapping the reference data
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1
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833
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December 2, 2022
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What would it take to adapt GTDB-Tk for protista and single-celled fungi?
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2
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785
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November 15, 2022
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I made a Snakemake Workflow for GTDB-tk
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0
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572
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October 24, 2022
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Error during gtdbtk classify_wf
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1
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1148
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October 23, 2022
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Migration guide from GTDBTk v1.x to v2.x
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0
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524
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September 29, 2022
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Can "Identify" also output Nucleotide sequences?
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3
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608
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August 10, 2022
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GTDB-TK without full data download?
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1
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704
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July 2, 2022
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`gtdbtk` meaning of numbers in internal node names in the output tree
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3
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760
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April 7, 2022
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Gtdb installation
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1
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1554
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March 18, 2022
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ID association in tree output
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21
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3530
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March 14, 2022
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Misleading taxonomy assignments
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1
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716
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December 1, 2021
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Why to recalculate RED values?
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2
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901
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August 9, 2021
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Filtration of results based on CheckM
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2
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1026
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July 28, 2021
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