About the GTDB-Tk category
|
|
0
|
512
|
August 4, 2020
|
Multiple gtdbtk classify_wf output treefile
|
|
7
|
527
|
August 16, 2023
|
Error in gtdbtk-2.3.0, de_novo_wf and test
|
|
2
|
122
|
July 6, 2023
|
--no-check-certificate
|
|
0
|
148
|
June 24, 2023
|
I would like to narrow down phlygenetic tree only based on type materials
|
|
4
|
206
|
June 13, 2023
|
[Errno 1] Operation not permitted
|
|
4
|
165
|
June 1, 2023
|
Why is GTDB-Tk hard coded to use FastTree with 1 CPU?
|
|
2
|
251
|
April 18, 2023
|
Convert Gtdbtk itol tree taxonomy into NCBI itol tree taxonomy
|
|
0
|
255
|
March 16, 2023
|
[de_novo_wf] taxa with multiple placements of equal quality
|
|
1
|
294
|
March 16, 2023
|
How can I use the --mash_db option of classify_wf
|
|
5
|
926
|
February 18, 2023
|
Error during gtdbtk classify_wf : No such gtdbtk.bac120.summary.tsv
|
|
1
|
366
|
January 11, 2023
|
Visualize GTDB classification
|
|
5
|
541
|
December 7, 2022
|
Issues with downloading the latest version (2.1.1) and mapping the reference data
|
|
1
|
464
|
December 2, 2022
|
What would it take to adapt GTDB-Tk for protista and single-celled fungi?
|
|
2
|
444
|
November 15, 2022
|
I made a Snakemake Workflow for GTDB-tk
|
|
0
|
322
|
October 24, 2022
|
Error during gtdbtk classify_wf
|
|
1
|
680
|
October 23, 2022
|
Migration guide from GTDBTk v1.x to v2.x
|
|
0
|
282
|
September 29, 2022
|
Can "Identify" also output Nucleotide sequences?
|
|
3
|
324
|
August 10, 2022
|
GTDB-TK without full data download?
|
|
1
|
424
|
July 2, 2022
|
`gtdbtk` meaning of numbers in internal node names in the output tree
|
|
3
|
438
|
April 7, 2022
|
Gtdb installation
|
|
1
|
909
|
March 18, 2022
|
ID association in tree output
|
|
21
|
2481
|
March 14, 2022
|
Misleading taxonomy assignments
|
|
1
|
463
|
December 1, 2021
|
Why to recalculate RED values?
|
|
2
|
629
|
August 9, 2021
|
Filtration of results based on CheckM
|
|
2
|
670
|
July 28, 2021
|
How does GTDB-Tk handle protists like single-cell algae and diatoms?
|
|
1
|
416
|
July 26, 2021
|
GTDB-Tk tree related questions
|
|
7
|
1500
|
June 12, 2021
|
How to run interrupted job from checkpoint instead of starting over?
|
|
1
|
840
|
June 10, 2021
|
Is it possible to filter the markers for a specific genus?
|
|
1
|
522
|
March 2, 2021
|
What format are newick trees and how to extract specific node?
|
|
3
|
3553
|
February 15, 2021
|