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About the GTDB-Tk category
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0
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892
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August 4, 2020
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The GTDB-Tk reference data does not exist or is corrupted
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1
|
8
|
May 29, 2025
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Existance of (or how to create) a 'tiny' version of GTDB for use for GTDB-Tk testing
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1
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72
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May 9, 2025
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How long does classify_wf usually take?
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0
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44
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February 26, 2025
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Gtdb-tk align taxa_filter question
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1
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69
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January 8, 2025
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GTDB-Tk files count
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3
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62
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December 17, 2024
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How is alignment fraction from skani used in screening?
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2
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68
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November 8, 2024
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Multiple gtdbtk classify_wf output treefile
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8
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1636
|
August 21, 2024
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Using classify_wf with low completeness genomes
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0
|
50
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August 12, 2024
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Decorating Tree from User Archaea MSA
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0
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57
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August 8, 2024
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Creating "new taxa" from the de_novo_wf tree
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2
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87
|
July 31, 2024
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Error in GTDB-Tk v2.4.0, gtdbtk classify_wf ; ERROR: Error generating Mash sketch:
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4
|
225
|
July 31, 2024
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Keep just my genomes
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1
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93
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July 29, 2024
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About "Cannot allocate memory" in gtdbtk classify_wf
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1
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72
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July 1, 2024
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GTDB-tk has given confliction results for two genomes using different command
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1
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174
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May 7, 2024
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ID association in tree output
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24
|
4358
|
May 6, 2024
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Classification only worked for archaea, bacterial output not created
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0
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142
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April 23, 2024
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How to estimate resource requirements for classifying 60k genomes?
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3
|
227
|
March 28, 2024
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GTDB-Tk backbone tree
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1
|
605
|
February 19, 2024
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Eukaryotes classified as new phyla or divergent prokaryotes
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4
|
587
|
October 27, 2023
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When should I use classify_wf instead of da_novo_wf?
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1
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815
|
October 26, 2023
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How to use my own genome data of only type strains to reconstruct phylogenetic tree using GTDB-Tk software?
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2
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552
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October 10, 2023
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Error in gtdbtk-2.3.0, de_novo_wf and test
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2
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656
|
July 6, 2023
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--no-check-certificate
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|
0
|
632
|
June 24, 2023
|
|
I would like to narrow down phlygenetic tree only based on type materials
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4
|
693
|
June 13, 2023
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[Errno 1] Operation not permitted
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4
|
570
|
June 1, 2023
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Why is GTDB-Tk hard coded to use FastTree with 1 CPU?
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|
2
|
705
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April 18, 2023
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Convert Gtdbtk itol tree taxonomy into NCBI itol tree taxonomy
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0
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831
|
March 16, 2023
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|
[de_novo_wf] taxa with multiple placements of equal quality
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|
1
|
1017
|
March 16, 2023
|
|
How can I use the --mash_db option of classify_wf
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5
|
3197
|
February 18, 2023
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