|
[Errno 1] Operation not permitted
|
|
4
|
577
|
June 1, 2023
|
|
Why is GTDB-Tk hard coded to use FastTree with 1 CPU?
|
|
2
|
713
|
April 18, 2023
|
|
Convert Gtdbtk itol tree taxonomy into NCBI itol tree taxonomy
|
|
0
|
852
|
March 16, 2023
|
|
[de_novo_wf] taxa with multiple placements of equal quality
|
|
1
|
1051
|
March 16, 2023
|
|
How can I use the --mash_db option of classify_wf
|
|
5
|
3534
|
February 18, 2023
|
|
Error during gtdbtk classify_wf : No such gtdbtk.bac120.summary.tsv
|
|
1
|
1043
|
January 11, 2023
|
|
Visualize GTDB classification
|
|
5
|
1817
|
December 7, 2022
|
|
Issues with downloading the latest version (2.1.1) and mapping the reference data
|
|
1
|
1093
|
December 2, 2022
|
|
What would it take to adapt GTDB-Tk for protista and single-celled fungi?
|
|
2
|
1029
|
November 15, 2022
|
|
I made a Snakemake Workflow for GTDB-tk
|
|
0
|
681
|
October 24, 2022
|
|
Error during gtdbtk classify_wf
|
|
1
|
1550
|
October 23, 2022
|
|
Migration guide from GTDBTk v1.x to v2.x
|
|
0
|
610
|
September 29, 2022
|
|
Can "Identify" also output Nucleotide sequences?
|
|
3
|
745
|
August 10, 2022
|
|
GTDB-TK without full data download?
|
|
1
|
815
|
July 2, 2022
|
|
`gtdbtk` meaning of numbers in internal node names in the output tree
|
|
3
|
914
|
April 7, 2022
|
|
Gtdb installation
|
|
1
|
2276
|
March 18, 2022
|
|
Misleading taxonomy assignments
|
|
1
|
832
|
December 1, 2021
|
|
Why to recalculate RED values?
|
|
2
|
965
|
August 9, 2021
|
|
Filtration of results based on CheckM
|
|
2
|
1167
|
July 28, 2021
|
|
How does GTDB-Tk handle protists like single-cell algae and diatoms?
|
|
1
|
767
|
July 26, 2021
|
|
GTDB-Tk tree related questions
|
|
7
|
3097
|
June 12, 2021
|
|
How to run interrupted job from checkpoint instead of starting over?
|
|
1
|
1087
|
June 10, 2021
|
|
Is it possible to filter the markers for a specific genus?
|
|
1
|
647
|
March 2, 2021
|
|
What format are newick trees and how to extract specific node?
|
|
3
|
4376
|
February 15, 2021
|
|
Using GTDB-Tk with gene binning tools
|
|
1
|
879
|
December 11, 2020
|
|
Ani_rep reference sketches
|
|
2
|
719
|
December 1, 2020
|
|
Performance of FastANI step
|
|
1
|
784
|
November 6, 2020
|
|
Resource usage optimization question
|
|
1
|
721
|
October 27, 2020
|
|
Add own marker for tree inference?
|
|
1
|
590
|
August 19, 2020
|