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I would like to narrow down phlygenetic tree only based on type materials
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4
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765
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June 13, 2023
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[Errno 1] Operation not permitted
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4
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597
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June 1, 2023
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Why is GTDB-Tk hard coded to use FastTree with 1 CPU?
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2
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737
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April 18, 2023
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Convert Gtdbtk itol tree taxonomy into NCBI itol tree taxonomy
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0
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863
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March 16, 2023
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[de_novo_wf] taxa with multiple placements of equal quality
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1
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1089
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March 16, 2023
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How can I use the --mash_db option of classify_wf
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5
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3627
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February 18, 2023
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Error during gtdbtk classify_wf : No such gtdbtk.bac120.summary.tsv
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1
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1055
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January 11, 2023
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Visualize GTDB classification
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5
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1923
|
December 7, 2022
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Issues with downloading the latest version (2.1.1) and mapping the reference data
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1
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1109
|
December 2, 2022
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What would it take to adapt GTDB-Tk for protista and single-celled fungi?
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2
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1093
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November 15, 2022
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I made a Snakemake Workflow for GTDB-tk
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0
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692
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October 24, 2022
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Error during gtdbtk classify_wf
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1
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1576
|
October 23, 2022
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Migration guide from GTDBTk v1.x to v2.x
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0
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616
|
September 29, 2022
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Can "Identify" also output Nucleotide sequences?
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3
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771
|
August 10, 2022
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GTDB-TK without full data download?
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1
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830
|
July 2, 2022
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`gtdbtk` meaning of numbers in internal node names in the output tree
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3
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978
|
April 7, 2022
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Gtdb installation
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1
|
2315
|
March 18, 2022
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Misleading taxonomy assignments
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1
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851
|
December 1, 2021
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Why to recalculate RED values?
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2
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984
|
August 9, 2021
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Filtration of results based on CheckM
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2
|
1195
|
July 28, 2021
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How does GTDB-Tk handle protists like single-cell algae and diatoms?
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|
1
|
797
|
July 26, 2021
|
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GTDB-Tk tree related questions
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7
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3246
|
June 12, 2021
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How to run interrupted job from checkpoint instead of starting over?
|
|
1
|
1096
|
June 10, 2021
|
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Is it possible to filter the markers for a specific genus?
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1
|
658
|
March 2, 2021
|
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What format are newick trees and how to extract specific node?
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|
3
|
4421
|
February 15, 2021
|
|
Using GTDB-Tk with gene binning tools
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1
|
892
|
December 11, 2020
|
|
Ani_rep reference sketches
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|
2
|
736
|
December 1, 2020
|
|
Performance of FastANI step
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|
1
|
796
|
November 6, 2020
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Resource usage optimization question
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1
|
743
|
October 27, 2020
|
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Add own marker for tree inference?
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|
1
|
602
|
August 19, 2020
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