How to see the differences between v202 and v207 releases?

GTDB
1

Hello! I used the GTDB with gtdb-tk to classify some MAGs that I made back in 2021, seeing that there is a version 207 of the database I want to know the differences between these two versions so I can consider reclassify my genomes. Is there a way in which I can make a comparison between two databases versions?

best regards,

Valentín.

2

Hi Valentin,

The Taxon History tool can be used to see how any given taxon has changed between releases:
https://gtdb.ecogenomic.org/taxon-history

You might also find gtdb-taxdump by Wei Shen useful:

Cheers,
Donovan