GTDB


Topic Replies Views Activity
FAQ / Guidelines

How can I classify my own genomes with the GTDB? We have developed a stand-alone application called GTDB-Tk. A specific FAQ for GTDB-Tk can be found here What is the GTDB versioning scheme? The GTDB version indicates b…

1 642 August 5, 2020
About the GTDB category
0 206 August 5, 2020
Representative genomes for higher taxonomic orders
0 4 June 26, 2022
16S, 23S and ssu_all_r207
1 9 June 25, 2022
How to submit data to GTDB
1 12 June 15, 2022
Which NCBI taxonomy version does each release use?
4 25 June 12, 2022
No FASTA file paths in metadata for release202 bac120 and ar122
1 11 June 12, 2022
194,600 genomes r95 download
10 467 May 12, 2022
Incorrect annotation in the representative genomes
5 188 April 21, 2022
Taxon History API vs Web
2 47 April 8, 2022
Could you provide .gbk files in next release?
2 68 February 23, 2022
Quality file from checkm for the newest version r202
1 132 December 29, 2021
Translation tables
4 97 December 28, 2021
Genome sizes for different taxonomic groups
1 83 December 1, 2021
Where can I found universal genie/mark gene set for each database genome
3 129 November 16, 2021
Candidatus
2 202 November 8, 2021
Multiple assembly ids queries
3 95 October 26, 2021
Integration of genomes not submitted to NCBI
2 106 October 20, 2021
Human/other contamination of microbial genomes
2 91 October 13, 2021
Compiling directory comprised of all Escherichia .faa files from the ‘gtdb_proteins_aa_reps’
0 92 July 30, 2021
Some genomes of PRJEB31003 are incorrectly tagged as "Isolate"
1 128 July 30, 2021
FASTANI database error in GTDB version 1-5-0
1 268 May 30, 2021
Bac120.tree genomes
1 202 May 16, 2021
GFF annotations
1 204 April 21, 2021
Uniqueness of names across the taxonomy
1 145 April 10, 2021
Pplacer requirements
2 576 April 7, 2021
Assess if a genome is a MAG with *_metadata_r95.tsv files
5 217 March 26, 2021
Data for phylogenetic placement of 16S amplicons?
1 216 March 21, 2021
16S gene copy nrs
2 218 March 15, 2021
Genomes with frameshift selected as GTDB representatives
5 228 February 22, 2021