GTDB


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FAQ / Guidelines

How can I classify my own genomes with the GTDB? We have developed a stand-alone application called GTDB-Tk. A specific FAQ for GTDB-Tk can be found here What is the GTDB versioning scheme? The GTDB version indicates b…

1 714 August 5, 2020
About the GTDB category
0 235 August 5, 2020
Pplacer requirements
4 662 July 21, 2022
Representative genomes for higher taxonomic orders
1 42 July 4, 2022
16S, 23S and ssu_all_r207
3 58 June 27, 2022
How to submit data to GTDB
1 57 June 15, 2022
Which NCBI taxonomy version does each release use?
4 55 June 12, 2022
No FASTA file paths in metadata for release202 bac120 and ar122
1 40 June 12, 2022
194,600 genomes r95 download
10 515 May 12, 2022
Incorrect annotation in the representative genomes
5 226 April 21, 2022
Taxon History API vs Web
2 65 April 8, 2022
Could you provide .gbk files in next release?
2 94 February 23, 2022
Quality file from checkm for the newest version r202
1 167 December 29, 2021
Translation tables
4 127 December 28, 2021
Genome sizes for different taxonomic groups
1 104 December 1, 2021
Where can I found universal genie/mark gene set for each database genome
3 172 November 16, 2021
Candidatus
2 232 November 8, 2021
Multiple assembly ids queries
3 117 October 26, 2021
Integration of genomes not submitted to NCBI
2 132 October 20, 2021
Human/other contamination of microbial genomes
2 112 October 13, 2021
Compiling directory comprised of all Escherichia .faa files from the ‘gtdb_proteins_aa_reps’
0 118 July 30, 2021
Some genomes of PRJEB31003 are incorrectly tagged as "Isolate"
1 147 July 30, 2021
FASTANI database error in GTDB version 1-5-0
1 368 May 30, 2021
Bac120.tree genomes
1 252 May 16, 2021
GFF annotations
1 229 April 21, 2021
Uniqueness of names across the taxonomy
1 163 April 10, 2021
Assess if a genome is a MAG with *_metadata_r95.tsv files
5 265 March 26, 2021
Data for phylogenetic placement of 16S amplicons?
1 262 March 21, 2021
16S gene copy nrs
2 240 March 15, 2021
Genomes with frameshift selected as GTDB representatives
5 260 February 22, 2021