GTDB


Topic Replies Views Activity
FAQ / Guidelines

How can I classify my own genomes with the GTDB? We have developed a stand-alone application called GTDB-Tk. A specific FAQ for GTDB-Tk can be found here What is the GTDB versioning scheme? The GTDB version indicates b…

1 799 August 5, 2020
About the GTDB category
0 258 August 5, 2020
Doubt about Genome QC methods
4 21 November 29, 2022
The GTDB corresponding NCBI species name
3 43 October 21, 2022
What's the content of gtdb_proteins_aa_reps file
0 23 September 29, 2022
Pplacer requirements
4 739 July 21, 2022
Representative genomes for higher taxonomic orders
1 67 July 4, 2022
16S, 23S and ssu_all_r207
3 103 June 27, 2022
How to submit data to GTDB
1 80 June 15, 2022
Which NCBI taxonomy version does each release use?
4 99 June 12, 2022
No FASTA file paths in metadata for release202 bac120 and ar122
1 73 June 12, 2022
194,600 genomes r95 download
10 566 May 12, 2022
Incorrect annotation in the representative genomes
5 295 April 21, 2022
Taxon History API vs Web
2 83 April 8, 2022
Could you provide .gbk files in next release?
2 120 February 23, 2022
Quality file from checkm for the newest version r202
1 212 December 29, 2021
Translation tables
4 174 December 28, 2021
Genome sizes for different taxonomic groups
1 120 December 1, 2021
Where can I found universal genie/mark gene set for each database genome
3 203 November 16, 2021
Candidatus
2 258 November 8, 2021
Multiple assembly ids queries
3 137 October 26, 2021
Integration of genomes not submitted to NCBI
2 162 October 20, 2021
Human/other contamination of microbial genomes
2 136 October 13, 2021
Compiling directory comprised of all Escherichia .faa files from the ‘gtdb_proteins_aa_reps’
0 133 July 30, 2021
Some genomes of PRJEB31003 are incorrectly tagged as "Isolate"
1 170 July 30, 2021
FASTANI database error in GTDB version 1-5-0
1 420 May 30, 2021
Bac120.tree genomes
1 312 May 16, 2021
GFF annotations
1 248 April 21, 2021
Uniqueness of names across the taxonomy
1 183 April 10, 2021
Assess if a genome is a MAG with *_metadata_r95.tsv files
5 305 March 26, 2021