GTDB Forum

GTDB


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FAQ / Guidelines

How can I classify my own genomes with the GTDB? We have developed a stand-alone application called GTDB-Tk. A specific FAQ for GTDB-Tk can be found here What is the GTDB versioning scheme? The GTDB version indicates b…

1 483 August 5, 2020
About the GTDB category
0 133 August 5, 2020
Where can I found universal genie/mark gene set for each database genome
3 32 November 16, 2021
Candidatus
2 115 November 8, 2021
194,600 genomes r95 download
9 339 October 27, 2021
Multiple assembly ids queries
3 26 October 26, 2021
Integration of genomes not submitted to NCBI
2 38 October 20, 2021
Human/other contamination of microbial genomes
2 34 October 13, 2021
Compiling directory comprised of all Escherichia .faa files from the ‘gtdb_proteins_aa_reps’
0 50 July 30, 2021
Some genomes of PRJEB31003 are incorrectly tagged as "Isolate"
1 68 July 30, 2021
FASTANI database error in GTDB version 1-5-0
1 124 May 30, 2021
Bac120.tree genomes
1 111 May 16, 2021
GFF annotations
1 126 April 21, 2021
Uniqueness of names across the taxonomy
1 96 April 10, 2021
Pplacer requirements
2 343 April 7, 2021
Assess if a genome is a MAG with *_metadata_r95.tsv files
5 141 March 26, 2021
Data for phylogenetic placement of 16S amplicons?
1 121 March 21, 2021
16S gene copy nrs
2 143 March 15, 2021
Genomes with frameshift selected as GTDB representatives
5 135 February 22, 2021
Reverse translating msa marker gene alignment
3 119 February 16, 2021
Table of Rank by RED
6 164 January 25, 2021
Scaffolds with lots of N nucleotides?
7 155 January 15, 2021
"undefined name" entries
2 121 January 8, 2021
Support for protists and microeukaryotes?
2 128 December 22, 2020
How to set up database with symbolic link?
1 129 December 18, 2020
o__Christensenellales have different class parent
3 148 November 13, 2020
CheckM marker set lineage?
1 182 October 16, 2020
Number of HQ Genomes in R95 discrepancy
1 140 October 7, 2020
Kraken2 compatible GTDB database
4 508 September 29, 2020
Inclusion of non-RefSeq MAGs in GTDB?
3 306 September 3, 2020