GTDB
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About the GTDB category
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0 | 85 | August 5, 2020 |
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FAQ / Guidelines
How can I classify my own genomes with the GTDB? We have developed a stand-alone application called GTDB-Tk. A specific FAQ for GTDB-Tk can be found here What is the GTDB versioning scheme? The GTDB version indicates b… |
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1 | 322 | August 5, 2020 |
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GFF annotations
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1 | 22 | April 21, 2021 |
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Uniqueness of names across the taxonomy
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1 | 38 | April 10, 2021 |
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Pplacer requirements
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2 | 115 | April 7, 2021 |
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Assess if a genome is a MAG with *_metadata_r95.tsv files
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5 | 53 | March 26, 2021 |
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Data for phylogenetic placement of 16S amplicons?
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1 | 41 | March 21, 2021 |
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16S gene copy nrs
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2 | 48 | March 15, 2021 |
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Genomes with frameshift selected as GTDB representatives
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5 | 63 | February 22, 2021 |
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Reverse translating msa marker gene alignment
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3 | 43 | February 16, 2021 |
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Table of Rank by RED
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6 | 79 | January 25, 2021 |
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Scaffolds with lots of N nucleotides?
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7 | 76 | January 15, 2021 |
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"undefined name" entries
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2 | 65 | January 8, 2021 |
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Support for protists and microeukaryotes?
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2 | 67 | December 22, 2020 |
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How to set up database with symbolic link?
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1 | 59 | December 18, 2020 |
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o__Christensenellales have different class parent
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3 | 94 | November 13, 2020 |
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CheckM marker set lineage?
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1 | 110 | October 16, 2020 |
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Number of HQ Genomes in R95 discrepancy
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1 | 96 | October 7, 2020 |
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194,600 genomes r95 download
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5 | 173 | October 6, 2020 |
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Kraken2 compatible GTDB database
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4 | 231 | September 29, 2020 |
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Inclusion of non-RefSeq MAGs in GTDB?
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3 | 222 | September 3, 2020 |
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GTDB release95 genome name prefixes
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3 | 223 | August 6, 2020 |