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Discrepancy between "type_species_of_genus" online and metadata file
|
|
1
|
235
|
March 28, 2024
|
|
Can we know if GTDB Sequences uses Poly(A) tails?
|
|
3
|
212
|
March 6, 2024
|
|
Note: the number of downloadable GTDB complete genomes mismatched with that in official website due to some records are deleted in NCBI
|
|
2
|
266
|
February 20, 2024
|
|
GTDB taxonomy of bv-brc (formerly Patric) genomes
|
|
2
|
462
|
February 14, 2024
|
|
Scoring representative genomes
|
|
2
|
224
|
February 6, 2024
|
|
Retrieve the number of species represented by a single genome
|
|
2
|
243
|
February 6, 2024
|
|
Is GTDB including all species from NCBI bacteria refseq?
|
|
1
|
303
|
January 24, 2024
|
|
Missing genera in NCBI / GTDB mapping files
|
|
1
|
282
|
January 8, 2024
|
|
How to obtain reference genome sequences in GTDB database
|
|
6
|
1105
|
December 14, 2023
|
|
Growth temperature metadata for GTDB
|
|
0
|
312
|
December 1, 2023
|
|
Genomes download
|
|
1
|
483
|
November 22, 2023
|
|
The ANI between species within a same genus is notably low
|
|
2
|
532
|
October 27, 2023
|
|
Downloading the genomes of all Staphylococcus saprophyticus available in GTDB
|
|
2
|
649
|
October 15, 2023
|
|
MD5SUM.txt not matching filenames on latest
|
|
0
|
489
|
July 3, 2023
|
|
MD5SUM filename
|
|
1
|
699
|
January 19, 2023
|
|
Will proGenomes3 be included in future releases of GTDB?
|
|
4
|
661
|
June 21, 2023
|
|
Why many gtdb representative genome pairs has ANI >95%?
|
|
4
|
655
|
June 9, 2023
|
|
Whether the sequence direction is consistent in GTDB Data?
|
|
2
|
635
|
June 2, 2023
|
|
Imminent release?
|
|
2
|
604
|
March 13, 2023
|
|
How to see the differences between v202 and v207 releases?
|
|
1
|
791
|
March 2, 2023
|
|
What is the relationship between taxa with suffixes and taxa without suffixes?
|
|
2
|
676
|
February 10, 2023
|
|
All genomes in gtdb v207 (not representative but all 317,542 genomes)
|
|
6
|
784
|
February 9, 2023
|
|
Plastid and mitochondrial sequences in GTDB?
|
|
2
|
606
|
January 13, 2023
|
|
Doubt about Genome QC methods
|
|
4
|
629
|
November 29, 2022
|
|
The GTDB corresponding NCBI species name
|
|
3
|
1036
|
October 21, 2022
|
|
What's the content of gtdb_proteins_aa_reps file
|
|
0
|
555
|
September 29, 2022
|
|
Representative genomes for higher taxonomic orders
|
|
1
|
586
|
July 4, 2022
|
|
16S, 23S and ssu_all_r207
|
|
3
|
1500
|
June 27, 2022
|
|
How to submit data to GTDB
|
|
1
|
626
|
June 15, 2022
|
|
Which NCBI taxonomy version does each release use?
|
|
4
|
1012
|
June 12, 2022
|