|
Possible to provide a test database
|
|
3
|
136
|
January 9, 2025
|
|
Contamination in Pseudomonas sp000955805
|
|
2
|
83
|
October 11, 2024
|
|
Inquiry Regarding Matching 16S rRNA genes and MAGs
|
|
1
|
493
|
November 14, 2024
|
|
Determining uncultured bacterial group/clade from GTDB data
|
|
2
|
110
|
November 12, 2024
|
|
MAG or Isolate and ambiguous checkm scores
|
|
1
|
107
|
October 30, 2024
|
|
Phylogenetic tree bootstrap values
|
|
2
|
61
|
September 6, 2024
|
|
Bac120_r207.tree missed some taxa
|
|
0
|
45
|
August 28, 2024
|
|
Pplacer requirements
|
|
5
|
2383
|
July 16, 2024
|
|
Marker gene phylogeny vs ANI and AF
|
|
2
|
276
|
June 12, 2024
|
|
Is there a difference in GTDB-taxonomy and metadata between Genbank and Refseq genomes of the same assembly?
|
|
1
|
248
|
May 29, 2024
|
|
Should samples be separated by tissue type during GTDB assignment?
|
|
0
|
143
|
May 3, 2024
|
|
R phyloseq and GTDB
|
|
0
|
169
|
April 19, 2024
|
|
Obtaining taxonomic ranks for genome accession numbers
|
|
1
|
233
|
March 28, 2024
|
|
Discrepancy between "type_species_of_genus" online and metadata file
|
|
1
|
285
|
March 28, 2024
|
|
Can we know if GTDB Sequences uses Poly(A) tails?
|
|
3
|
255
|
March 6, 2024
|
|
Note: the number of downloadable GTDB complete genomes mismatched with that in official website due to some records are deleted in NCBI
|
|
2
|
313
|
February 20, 2024
|
|
GTDB taxonomy of bv-brc (formerly Patric) genomes
|
|
2
|
535
|
February 14, 2024
|
|
Scoring representative genomes
|
|
2
|
278
|
February 6, 2024
|
|
Retrieve the number of species represented by a single genome
|
|
2
|
291
|
February 6, 2024
|
|
Is GTDB including all species from NCBI bacteria refseq?
|
|
1
|
327
|
January 24, 2024
|
|
Missing genera in NCBI / GTDB mapping files
|
|
1
|
320
|
January 8, 2024
|
|
How to obtain reference genome sequences in GTDB database
|
|
6
|
1395
|
December 14, 2023
|
|
Growth temperature metadata for GTDB
|
|
0
|
323
|
December 1, 2023
|
|
Genomes download
|
|
1
|
540
|
November 22, 2023
|
|
The ANI between species within a same genus is notably low
|
|
2
|
600
|
October 27, 2023
|
|
Downloading the genomes of all Staphylococcus saprophyticus available in GTDB
|
|
2
|
712
|
October 15, 2023
|
|
MD5SUM.txt not matching filenames on latest
|
|
0
|
505
|
July 3, 2023
|
|
MD5SUM filename
|
|
1
|
717
|
January 19, 2023
|
|
Will proGenomes3 be included in future releases of GTDB?
|
|
4
|
729
|
June 21, 2023
|
|
Why many gtdb representative genome pairs has ANI >95%?
|
|
4
|
722
|
June 9, 2023
|