|
Pplacer requirements
|
|
5
|
2228
|
July 16, 2024
|
|
Marker gene phylogeny vs ANI and AF
|
|
2
|
213
|
June 12, 2024
|
|
Is there a difference in GTDB-taxonomy and metadata between Genbank and Refseq genomes of the same assembly?
|
|
1
|
207
|
May 29, 2024
|
|
Should samples be separated by tissue type during GTDB assignment?
|
|
0
|
127
|
May 3, 2024
|
|
R phyloseq and GTDB
|
|
0
|
161
|
April 19, 2024
|
|
Obtaining taxonomic ranks for genome accession numbers
|
|
1
|
205
|
March 28, 2024
|
|
Discrepancy between "type_species_of_genus" online and metadata file
|
|
1
|
239
|
March 28, 2024
|
|
Can we know if GTDB Sequences uses Poly(A) tails?
|
|
3
|
213
|
March 6, 2024
|
|
Note: the number of downloadable GTDB complete genomes mismatched with that in official website due to some records are deleted in NCBI
|
|
2
|
274
|
February 20, 2024
|
|
GTDB taxonomy of bv-brc (formerly Patric) genomes
|
|
2
|
464
|
February 14, 2024
|
|
Scoring representative genomes
|
|
2
|
226
|
February 6, 2024
|
|
Retrieve the number of species represented by a single genome
|
|
2
|
244
|
February 6, 2024
|
|
Is GTDB including all species from NCBI bacteria refseq?
|
|
1
|
309
|
January 24, 2024
|
|
Missing genera in NCBI / GTDB mapping files
|
|
1
|
294
|
January 8, 2024
|
|
How to obtain reference genome sequences in GTDB database
|
|
6
|
1179
|
December 14, 2023
|
|
Growth temperature metadata for GTDB
|
|
0
|
315
|
December 1, 2023
|
|
Genomes download
|
|
1
|
490
|
November 22, 2023
|
|
The ANI between species within a same genus is notably low
|
|
2
|
538
|
October 27, 2023
|
|
Downloading the genomes of all Staphylococcus saprophyticus available in GTDB
|
|
2
|
656
|
October 15, 2023
|
|
MD5SUM.txt not matching filenames on latest
|
|
0
|
491
|
July 3, 2023
|
|
MD5SUM filename
|
|
1
|
705
|
January 19, 2023
|
|
Will proGenomes3 be included in future releases of GTDB?
|
|
4
|
666
|
June 21, 2023
|
|
Why many gtdb representative genome pairs has ANI >95%?
|
|
4
|
665
|
June 9, 2023
|
|
Whether the sequence direction is consistent in GTDB Data?
|
|
2
|
637
|
June 2, 2023
|
|
Imminent release?
|
|
2
|
611
|
March 13, 2023
|
|
How to see the differences between v202 and v207 releases?
|
|
1
|
799
|
March 2, 2023
|
|
What is the relationship between taxa with suffixes and taxa without suffixes?
|
|
2
|
682
|
February 10, 2023
|
|
All genomes in gtdb v207 (not representative but all 317,542 genomes)
|
|
6
|
789
|
February 9, 2023
|
|
Plastid and mitochondrial sequences in GTDB?
|
|
2
|
610
|
January 13, 2023
|
|
Doubt about Genome QC methods
|
|
4
|
630
|
November 29, 2022
|