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GTDB taxonomy of bv-brc (formerly Patric) genomes
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2
|
458
|
February 14, 2024
|
|
Scoring representative genomes
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2
|
222
|
February 6, 2024
|
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Retrieve the number of species represented by a single genome
|
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2
|
240
|
February 6, 2024
|
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Is GTDB including all species from NCBI bacteria refseq?
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1
|
294
|
January 24, 2024
|
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Missing genera in NCBI / GTDB mapping files
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1
|
277
|
January 8, 2024
|
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How to obtain reference genome sequences in GTDB database
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6
|
1041
|
December 14, 2023
|
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Growth temperature metadata for GTDB
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|
0
|
311
|
December 1, 2023
|
|
Genomes download
|
|
1
|
477
|
November 22, 2023
|
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The ANI between species within a same genus is notably low
|
|
2
|
520
|
October 27, 2023
|
|
Downloading the genomes of all Staphylococcus saprophyticus available in GTDB
|
|
2
|
641
|
October 15, 2023
|
|
MD5SUM.txt not matching filenames on latest
|
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0
|
487
|
July 3, 2023
|
|
MD5SUM filename
|
|
1
|
699
|
January 19, 2023
|
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Will proGenomes3 be included in future releases of GTDB?
|
|
4
|
656
|
June 21, 2023
|
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Why many gtdb representative genome pairs has ANI >95%?
|
|
4
|
648
|
June 9, 2023
|
|
Whether the sequence direction is consistent in GTDB Data?
|
|
2
|
635
|
June 2, 2023
|
|
Imminent release?
|
|
2
|
603
|
March 13, 2023
|
|
How to see the differences between v202 and v207 releases?
|
|
1
|
786
|
March 2, 2023
|
|
What is the relationship between taxa with suffixes and taxa without suffixes?
|
|
2
|
672
|
February 10, 2023
|
|
All genomes in gtdb v207 (not representative but all 317,542 genomes)
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|
6
|
775
|
February 9, 2023
|
|
Plastid and mitochondrial sequences in GTDB?
|
|
2
|
604
|
January 13, 2023
|
|
Doubt about Genome QC methods
|
|
4
|
626
|
November 29, 2022
|
|
The GTDB corresponding NCBI species name
|
|
3
|
973
|
October 21, 2022
|
|
What's the content of gtdb_proteins_aa_reps file
|
|
0
|
555
|
September 29, 2022
|
|
Representative genomes for higher taxonomic orders
|
|
1
|
584
|
July 4, 2022
|
|
16S, 23S and ssu_all_r207
|
|
3
|
1441
|
June 27, 2022
|
|
How to submit data to GTDB
|
|
1
|
621
|
June 15, 2022
|
|
Which NCBI taxonomy version does each release use?
|
|
4
|
993
|
June 12, 2022
|
|
No FASTA file paths in metadata for release202 bac120 and ar122
|
|
1
|
677
|
June 12, 2022
|
|
194,600 genomes r95 download
|
|
10
|
1540
|
May 12, 2022
|
|
Incorrect annotation in the representative genomes
|
|
5
|
1033
|
April 21, 2022
|