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Contamination in Pseudomonas sp000955805
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2
|
76
|
October 11, 2024
|
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Inquiry Regarding Matching 16S rRNA genes and MAGs
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|
1
|
479
|
November 14, 2024
|
|
Determining uncultured bacterial group/clade from GTDB data
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|
2
|
102
|
November 12, 2024
|
|
MAG or Isolate and ambiguous checkm scores
|
|
1
|
101
|
October 30, 2024
|
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Phylogenetic tree bootstrap values
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2
|
58
|
September 6, 2024
|
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Bac120_r207.tree missed some taxa
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0
|
44
|
August 28, 2024
|
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Pplacer requirements
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5
|
2363
|
July 16, 2024
|
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Marker gene phylogeny vs ANI and AF
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|
2
|
266
|
June 12, 2024
|
|
Is there a difference in GTDB-taxonomy and metadata between Genbank and Refseq genomes of the same assembly?
|
|
1
|
236
|
May 29, 2024
|
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Should samples be separated by tissue type during GTDB assignment?
|
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0
|
140
|
May 3, 2024
|
|
R phyloseq and GTDB
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|
0
|
166
|
April 19, 2024
|
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Obtaining taxonomic ranks for genome accession numbers
|
|
1
|
229
|
March 28, 2024
|
|
Discrepancy between "type_species_of_genus" online and metadata file
|
|
1
|
271
|
March 28, 2024
|
|
Can we know if GTDB Sequences uses Poly(A) tails?
|
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3
|
250
|
March 6, 2024
|
|
Note: the number of downloadable GTDB complete genomes mismatched with that in official website due to some records are deleted in NCBI
|
|
2
|
305
|
February 20, 2024
|
|
GTDB taxonomy of bv-brc (formerly Patric) genomes
|
|
2
|
528
|
February 14, 2024
|
|
Scoring representative genomes
|
|
2
|
271
|
February 6, 2024
|
|
Retrieve the number of species represented by a single genome
|
|
2
|
279
|
February 6, 2024
|
|
Is GTDB including all species from NCBI bacteria refseq?
|
|
1
|
322
|
January 24, 2024
|
|
Missing genera in NCBI / GTDB mapping files
|
|
1
|
313
|
January 8, 2024
|
|
How to obtain reference genome sequences in GTDB database
|
|
6
|
1353
|
December 14, 2023
|
|
Growth temperature metadata for GTDB
|
|
0
|
322
|
December 1, 2023
|
|
Genomes download
|
|
1
|
532
|
November 22, 2023
|
|
The ANI between species within a same genus is notably low
|
|
2
|
584
|
October 27, 2023
|
|
Downloading the genomes of all Staphylococcus saprophyticus available in GTDB
|
|
2
|
709
|
October 15, 2023
|
|
MD5SUM.txt not matching filenames on latest
|
|
0
|
503
|
July 3, 2023
|
|
MD5SUM filename
|
|
1
|
715
|
January 19, 2023
|
|
Will proGenomes3 be included in future releases of GTDB?
|
|
4
|
714
|
June 21, 2023
|
|
Why many gtdb representative genome pairs has ANI >95%?
|
|
4
|
709
|
June 9, 2023
|
|
Whether the sequence direction is consistent in GTDB Data?
|
|
2
|
648
|
June 2, 2023
|