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Plastid and mitochondrial sequences in GTDB?
|
|
2
|
620
|
January 13, 2023
|
|
Doubt about Genome QC methods
|
|
4
|
674
|
November 29, 2022
|
|
The GTDB corresponding NCBI species name
|
|
3
|
1190
|
October 21, 2022
|
|
What's the content of gtdb_proteins_aa_reps file
|
|
0
|
557
|
September 29, 2022
|
|
Representative genomes for higher taxonomic orders
|
|
1
|
596
|
July 4, 2022
|
|
16S, 23S and ssu_all_r207
|
|
3
|
1649
|
June 27, 2022
|
|
How to submit data to GTDB
|
|
1
|
651
|
June 15, 2022
|
|
Which NCBI taxonomy version does each release use?
|
|
4
|
1103
|
June 12, 2022
|
|
No FASTA file paths in metadata for release202 bac120 and ar122
|
|
1
|
729
|
June 12, 2022
|
|
194,600 genomes r95 download
|
|
10
|
1672
|
May 12, 2022
|
|
Incorrect annotation in the representative genomes
|
|
5
|
1073
|
April 21, 2022
|
|
Could you provide .gbk files in next release?
|
|
2
|
601
|
February 23, 2022
|
|
Quality file from checkm for the newest version r202
|
|
1
|
766
|
December 29, 2021
|
|
Translation tables
|
|
4
|
1035
|
December 28, 2021
|
|
Genome sizes for different taxonomic groups
|
|
1
|
565
|
December 1, 2021
|
|
Where can I found universal genie/mark gene set for each database genome
|
|
3
|
706
|
November 16, 2021
|
|
Candidatus
|
|
2
|
653
|
November 8, 2021
|
|
Multiple assembly ids queries
|
|
3
|
507
|
October 26, 2021
|
|
Integration of genomes not submitted to NCBI
|
|
2
|
513
|
October 20, 2021
|
|
Human/other contamination of microbial genomes
|
|
2
|
434
|
October 13, 2021
|
|
Compiling directory comprised of all Escherichia .faa files from the ‘gtdb_proteins_aa_reps’
|
|
0
|
396
|
July 30, 2021
|
|
Some genomes of PRJEB31003 are incorrectly tagged as "Isolate"
|
|
1
|
416
|
July 30, 2021
|
|
FASTANI database error in GTDB version 1-5-0
|
|
1
|
1330
|
May 30, 2021
|
|
Bac120.tree genomes
|
|
1
|
785
|
May 16, 2021
|
|
GFF annotations
|
|
1
|
515
|
April 21, 2021
|
|
Uniqueness of names across the taxonomy
|
|
1
|
403
|
April 10, 2021
|
|
Assess if a genome is a MAG with *_metadata_r95.tsv files
|
|
5
|
914
|
March 26, 2021
|
|
Data for phylogenetic placement of 16S amplicons?
|
|
1
|
721
|
March 21, 2021
|
|
16S gene copy nrs
|
|
2
|
619
|
March 15, 2021
|
|
Genomes with frameshift selected as GTDB representatives
|
|
5
|
741
|
February 22, 2021
|