|
How can I use the --mash_db option of classify_wf
|
|
5
|
3550
|
February 18, 2023
|
|
What is the relationship between taxa with suffixes and taxa without suffixes?
|
|
2
|
686
|
February 10, 2023
|
|
All genomes in gtdb v207 (not representative but all 317,542 genomes)
|
|
6
|
792
|
February 9, 2023
|
|
Error running GTDB-Tk v2.1.1: AttributeError: module 'numpy' has no attribute 'bool'
|
|
6
|
4853
|
February 7, 2023
|
|
Plastid and mitochondrial sequences in GTDB?
|
|
2
|
612
|
January 13, 2023
|
|
Error during gtdbtk classify_wf : No such gtdbtk.bac120.summary.tsv
|
|
1
|
1046
|
January 11, 2023
|
|
Stable gene annotation dataset
|
|
3
|
835
|
December 12, 2022
|
|
Visualize GTDB classification
|
|
5
|
1846
|
December 7, 2022
|
|
Issues with downloading the latest version (2.1.1) and mapping the reference data
|
|
1
|
1094
|
December 2, 2022
|
|
Doubt about Genome QC methods
|
|
4
|
631
|
November 29, 2022
|
|
What would it take to adapt GTDB-Tk for protista and single-celled fungi?
|
|
2
|
1034
|
November 15, 2022
|
|
s_Xanthomonas cissicola reclassificaiton
|
|
2
|
762
|
November 9, 2022
|
|
Pallen et al. Candidatus names and GTDB updates
|
|
1
|
680
|
October 25, 2022
|
|
I made a Snakemake Workflow for GTDB-tk
|
|
0
|
684
|
October 24, 2022
|
|
Error during gtdbtk classify_wf
|
|
1
|
1555
|
October 23, 2022
|
|
The GTDB corresponding NCBI species name
|
|
3
|
1104
|
October 21, 2022
|
|
PNG files of the latest archaeal and bacterial trees
|
|
2
|
744
|
October 8, 2022
|
|
R202 to r207 taxonomy conversion table?
|
|
2
|
798
|
October 6, 2022
|
|
Migration guide from GTDBTk v1.x to v2.x
|
|
0
|
610
|
September 29, 2022
|
|
What's the content of gtdb_proteins_aa_reps file
|
|
0
|
556
|
September 29, 2022
|
|
Can "Identify" also output Nucleotide sequences?
|
|
3
|
745
|
August 10, 2022
|
|
Representative genomes for higher taxonomic orders
|
|
1
|
591
|
July 4, 2022
|
|
GTDB-TK without full data download?
|
|
1
|
817
|
July 2, 2022
|
|
16S, 23S and ssu_all_r207
|
|
3
|
1586
|
June 27, 2022
|
|
How to submit data to GTDB
|
|
1
|
631
|
June 15, 2022
|
|
Which NCBI taxonomy version does each release use?
|
|
4
|
1039
|
June 12, 2022
|
|
No FASTA file paths in metadata for release202 bac120 and ar122
|
|
1
|
704
|
June 12, 2022
|
|
Older tree versions
|
|
1
|
717
|
June 9, 2022
|
|
Biological sence of separation Firmicutes on Firmicutes_ABCD
|
|
1
|
2101
|
June 1, 2022
|
|
Backtracking between versions?
|
|
1
|
696
|
May 26, 2022
|