|
Root of bacterial tree?
|
|
3
|
1028
|
January 20, 2025
|
|
Possible to provide a test database
|
|
3
|
90
|
January 9, 2025
|
|
Gtdb-tk align taxa_filter question
|
|
1
|
93
|
January 8, 2025
|
|
Upload my own sequences
|
|
1
|
64
|
January 7, 2025
|
|
MSA tool for marker gene alignment
|
|
2
|
69
|
December 17, 2024
|
|
GTDB-Tk files count
|
|
3
|
102
|
December 17, 2024
|
|
Contamination in Pseudomonas sp000955805
|
|
2
|
54
|
October 11, 2024
|
|
Naming of polyphyletic groups
|
|
3
|
80
|
November 25, 2024
|
|
Inquiry Regarding Matching 16S rRNA genes and MAGs
|
|
1
|
433
|
November 14, 2024
|
|
Determining uncultured bacterial group/clade from GTDB data
|
|
2
|
55
|
November 12, 2024
|
|
How is alignment fraction from skani used in screening?
|
|
2
|
153
|
November 8, 2024
|
|
Why is Bartonella classified as Bartonella_A and Bartonella_B
|
|
3
|
97
|
October 30, 2024
|
|
MAG or Isolate and ambiguous checkm scores
|
|
1
|
71
|
October 30, 2024
|
|
f__NBVN01
|
|
2
|
27
|
October 28, 2024
|
|
Phylogenetic tree bootstrap values
|
|
2
|
45
|
September 6, 2024
|
|
Bac120_r207.tree missed some taxa
|
|
0
|
38
|
August 28, 2024
|
|
Multiple gtdbtk classify_wf output treefile
|
|
8
|
1830
|
August 21, 2024
|
|
Using classify_wf with low completeness genomes
|
|
0
|
61
|
August 12, 2024
|
|
Decorating Tree from User Archaea MSA
|
|
0
|
89
|
August 8, 2024
|
|
Creating "new taxa" from the de_novo_wf tree
|
|
2
|
155
|
July 31, 2024
|
|
Error in GTDB-Tk v2.4.0, gtdbtk classify_wf ; ERROR: Error generating Mash sketch:
|
|
4
|
328
|
July 31, 2024
|
|
Keep just my genomes
|
|
1
|
139
|
July 29, 2024
|
|
Pplacer requirements
|
|
5
|
2237
|
July 16, 2024
|
|
Bartonella is classified within the family Rhizobiaceae
|
|
1
|
97
|
July 9, 2024
|
|
About "Cannot allocate memory" in gtdbtk classify_wf
|
|
1
|
99
|
July 1, 2024
|
|
Marker gene phylogeny vs ANI and AF
|
|
2
|
217
|
June 12, 2024
|
|
Divergences
|
|
1
|
112
|
June 10, 2024
|
|
Is there a difference in GTDB-taxonomy and metadata between Genbank and Refseq genomes of the same assembly?
|
|
1
|
208
|
May 29, 2024
|
|
Pseudonocardiaceae is classified as Mycobacteriales
|
|
3
|
147
|
May 24, 2024
|
|
Gtdbtk - gtdb to ncbi
|
|
1
|
180
|
May 17, 2024
|